hi
I installed CCP4 with Coot downloaded as a binary from the CCP4 website on a 64bit Ubuntu 9.04.
The installation was flawless and the setup scripts ran like a charm.
however, when i type ccp4i to get the GUI.
i get the following error message:
exec: 4: /usr/local/xtal/tcltk++/bin/bltwish: not found
bltwish is there in the specified directory, which i manually checked.
for coot,
i get the following error messages:.
COOT_PREFIX is /usr/local/xtal/Coot-0.5.2
/usr/local/xtal/Coot-0.5.2/bin/coot-real
/usr/local/xtal/Coot-0.5.2/bin/coot: 123: /usr/local/xtal/Coot-0.5.2/bin/coot-real: not found
/usr/local/xtal/Coot-0.5.2/bin/coot: 130: /usr/local/xtal/Coot-0.5.2/bin/guile: not found
All these files are there in the specified directories, which i checked manually.
But still i could not run.
Am i doing some thing terribly wrong ?
sincerely
sankar
On Sat, 04 Jul 2009 Thomas J Magliery PhD wrote :
> Hi, I just installed the 64-bit version of Ubuntu 9.04
> Desktop, and then
> I installed CCP4 6.1.1 using the standard package and
> installation
> script. I can run ccp4i successfully. However, when I
> try to run Coot,
> I get a bunch of errors. I think the problem is that
> Coot was compiled
> with 32-bit libraries, which I don't have.
>
> Is there some way to fix this without compiling Coot or
> re-installing
> with 32-bit Ubuntu? Who knows how, but I have CCP4
> (6.0.2) and Coot
> (0.5-pre-1) working on my 64-bit FC8 laptop.
>
> Thanks,
> Tom
>
> ===
> COOT_PREFIX is /usr/local/CCP4/Coot-0.5.2
> /usr/local/CCP4/Coot-0.5.2/bin/coot-real
> Acquiring application resources from
> /usr/local/CCP4/Coot-0.5.2/share/coot/cootrc
> Gtk-Message: Failed to load module
> "canberra-gtk-module":
> /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so:
> wrong ELF class:
> ELFCLASS64
> INFO:: splash_screen_pixmap_dir
> /usr/local/CCP4/Coot-0.5.2/share/coot/pixmaps
> INFO:: Colours file: /usr/local/CCP4/Coot-0.5.2/share/co-
> ot/colours.def
> loaded
> INFO:: Using Standard CCP4 Refmac dictionary from
> CLIBD_MON:
> /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers/
> There are 118 data in
> /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//list/mon_l-
> ib_list.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//a/ALA.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//a/ASP.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//a/ASN.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//c/CYS.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//g/GLN.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//g/GLY.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//g/GLU.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//p/PHE.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//h/HIS.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//i/ILE.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//l/LYS.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//l/LEU.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//m/MET.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//m/MSE.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//p/PRO.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//a/ARG.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//s/SER.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//t/THR.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//v/VAL.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//t/TRP.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//t/TYR.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//p/PO4.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//s/SO4.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//g/GOL.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//e/ETH.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//c/CIT.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//a/AR.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//a/AD.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//c/CR.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//c/CD.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//g/GR.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//g/GD.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//t/TD.cif
> There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> monomers//u/UR.cif
> Reading coordinate file:
> /usr/local/CCP4/Coot-0.5.2/share/coot/standard-residues.-
> pdb
> PDB file /usr/local/CCP4/Coot-0.5.2/share/coot/standard--
> residues.pdb has
> been read.
> Spacegroup: P 1
> Cell: 40.631 109.18 93.243 90 90 90
> /usr/lib/gio/modules/libgioremote-volume-monitor.so:
> wrong ELF class:
> ELFCLASS64
> Failed to load module: /usr/lib/gio/modules/libgioremote-
> -volume-monitor.so
> /usr/lib/gio/modules/libgvfsdbus.so: wrong ELF class:
> ELFCLASS64
> Failed to load module: /usr/lib/gio/modules/libgvfsdbus.-
> so
> /usr/lib/gio/modules/libgiogconf.so: wrong ELF class:
> ELFCLASS64
> Failed to load module: /usr/lib/gio/modules/libgiogconf.-
> so
> initalize graphics molecules...done.
> (filter-fileselection-filenames-state)
> (get-active-map-drag-flag)
> (use-graphics-interface-state)
> ERROR: In procedure dynamic-link:
> ERROR: file: "libguile-srfi-srfi-1-v-3", message:
> "/usr/lib/libguile-srfi-srfi-1-v-3.so.3: wrong ELF
> class: ELFCLASS64"
> Gtk-Message: Failed to load module
> "canberra-gtk-module":
> /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so:
> wrong ELF class:
> ELFCLASS64
> coot-exe: "/usr/local/CCP4/Coot-0.5.2/bin/coot-real"
> coot-version:
> /usr/local/CCP4/Coot-0.5.2/bin/coot-real
> core: #f
> No core file found. No debugging
> ===
>
> P.S. Hi Paul.
>
> --
> Thomas J. Magliery, Ph.D.
> Assistant Professor
> Department of Chemistry
> & Department of Biochemistry
> The Ohio State University
> 1043 Evans Laboratory
> 100 West 18th Ave.
> Columbus, OH 43210-1185
>
> (614) 247-8425 office
> (614) 292-1685 fax
> [log in to unmask]
> http://www.chemistry.ohio-state.edu/~magliery
Sankar narayanan M.R,
C/o Prof. S. Krishnaswamy,
Dept. of Genetic Engineering,
School of Biotechnology,
Madurai Kamaraj University,
Madurai 625021. TN,
INDIA
Phone : +91 452 245 9931, +91 452 245 9141,
Mobile : +91 94860 88613
e-mail:[log in to unmask]
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