Buz,
# Yep, PyMOL 1.2:
load $TUT/1hpv.pdb
save 1hpv.fasta
# or by selection
save 1hpv_A.fasta, chain A
# etc.
Cheers
Warren
> -----Original Message-----
> From: Buz Barstow [mailto:[log in to unmask]]
> Sent: Thursday, August 13, 2009 2:39 PM
> To: [log in to unmask]; [log in to unmask]
> Subject: [PyMOL] Extracting Amino Acid Sequence from PDB File
>
> Hi All,
>
> Does anyone know of a program that can extract the amino sequence of a
> protein from a PDB file and output it as a FASTA file?
>
> Thanks! and all the best,
>
> --Buz
>
>
>
>
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