Hi - no the situation is the same I think - FILM isn't completing. The
next stage will not start until FILM has finished (or failed!).
Cheers.
On 17 Aug 2009, at 18:46, Shih-Wei Wu wrote:
> Hi Steve
> Thanks for the pointer. What is not clear to me is that in my case,
> the stats/sigmasquareds existed whereas in the other query the stats/
> corrections wasn't created according to the email.
>
> Could it be that the post-stats asked for stats/sigmasquareds before
> it was created?
>
> thanks
> shihwei
>
> On Mon, Aug 17, 2009 at 3:16 AM, Steve Smith <[log in to unmask]>
> wrote:
> Hi - please see the recent reply to a similar query:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0908&L=FSL&P=R11874&X=5181BB38EE3D0C56E6&Y=steve%40fmrib.ox.ac.uk
> Cheers.
>
>
> On 15 Aug 2009, at 06:17, shih-Wei Wu wrote:
>
> Dear all
>
> we encountered an error msg while running 1st-level FEAT in our
> cluster:
>
> Post-stats
>
> /share/apps/fsl/bin/contrast_mgr stats design.con
> ** ERROR (nifti_image_read): failed to find header file for
> 'stats/sigmasquareds'
> ** ERROR: nifti_image_open(stats/sigmasquareds): bad header info
> Error: failed to open file stats/sigmasquareds
> ERROR: Could not open image stats/sigmasquareds
> Image Exception : #22 :: Failed to read volume stats/sigmasquareds
>
> However, when checking sigmasquareds under stats,
> sigmasquareds.nii.gz exists.
> Other parts of FEAT (Prestats, Stats, Registration) ran fine.
>
> We are testing how FSL runs in our cluster with torque as the
> scheduler.
>
> Any idea what might cause this?
>
> thanks!
> shih-wei
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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