Hi,
The error message here is a Segmentation fault which is
quite serious. Is this repeatable?
If so, can you upload the data so that we can see what is
causing it?
All the best,
Mark
On 14 Aug 2009, at 19:01, Buyean Lee wrote:
> There are about 17 error files, but only this one has 168 bytes (the
> rest have o bytes).
>
> Thank you,
>
> Buyean
>
>
> -----Original Message-----
> From: Mark Jenkinson <[log in to unmask]>
> To: [log in to unmask]
> Sent: Fri, Aug 14, 2009 10:42 am
> Subject: Re: [FSL] Strange FIRST (FSL 4.1.4) error - missing output
> files
>
> Hi,
>
> The logs should be in a directory *.logs and you want
> to look at all files *.e* as these contain the error messages.
>
> All the best,
> Mark
>
> On 14 Aug 2009, at 16:59, Buyean Lee wrote:
>
> > Hi Mark,
> >
> > Where can I find the error logs?
> >
> > Buyean
> >
> > -----Original Message-----
> > From: Mark Jenkinson <[log in to unmask]>
> > To: [log in to unmask]
> > Sent: Fri, Aug 14, 2009 6:11 am
> > Subject: Re: [FSL] Strange FIRST (FSL 4.1.4) error - missing
> output > files
> >
> > Hi,
> >
> > Can you send us the details in the error logs?
> > We need to see why the brainstem segmentation is failing.
> >
> > All the best,
> > Mark
> >
> > On 13 Aug 2009, at 21:33, Buyean Lee wrote:
> >
> > > Hi,
> > >
> > > Strangely, FIRST ('run_first_all') does not generate the output
> > > files (both *_all_fast_firstseg.nii and *_all_fast_origsegs.nii)
> of > > a few MRIs (5/92 MRIs).
> > > I believe this is due to the fact that FIRST failed to generate
> > > *_BrStem.* files of those 5 MRIs (this is why it can't run
> fslmerge > > in the 'run_first_all' script).
> > >
> > >
> > > Buyean
> <first.e21133.17>
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