Take a look at fslmaths -- that should be all you need to manipulate the
images and create masks.
David
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of John Kuster
Sent: Thursday, July 16, 2009 11:18 AM
To: [log in to unmask]
Subject: [FSL] How to create one mask using multiple ROI's
Dear FSLers,
I would like to take a 3d image and mask out everything but a certain
number of regions of interest, all in this one mask. Is there a command
that can do this? I checked here,
http://www.fmrib.ox.ac.uk/fsl/avwutils/index.html, but did not see one.
Also, similarly, if I want to edit a mask to include only a ROI, or a
set of ROI's how can I do that?
Thanks for your time and help,
Jake
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