Hi Marc,
thanks for your reply.
I cannot open the example func (or the mean func) at all with fslview:
[RK3:~/SOX_FSL] dorit% fslview
GAZ_P_22/mri/run2/func_datasmooth5.feat/example_func.nii.gz
** ERROR (nifti_image_read): failed to find header file for
'/Users/dorit/SOX_FSL/GAZ_P_22/mri/run2/func_datasmooth5.feat/filtered_func_data'
** ERROR:
nifti_image_open(/Users/dorit/SOX_FSL/GAZ_P_22/mri/run2/func_datasmooth5.feat/filter
ed_func_data): bad header info
Error: failed to open file
/Users/dorit/SOX_FSL/GAZ_P_22/mri/run2/func_datasmooth5.feat/filtered_func_data
The original .nii looked just fine in fslview...
I'm working on a 10.5. intel mac, data is stored locally...
Thanks,
Dorit
This warning definitely means that some images are all zeros.
Does example_func look OK in FSLView?
What about prefiltered_func_data if you still have it?
If you don't have it, just use the commands below to regenerate it
and then check.
Having a look at the data in FSLView is the best way to check.
If you cannot see a problem then let us know what type of machine
you are running on and where the data is stored (e.g. NFS mounted
storage, local disk, etc.).
All the best,
Mark
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