Hi, with the command tbss_nonfa MD, I get two results all_MD.nii.gz and
MD_skeletonised.nii.gz in the stats folder. May I ask if it is the right
step to do randomise with the command whereby I use the old
mean_FA_skeleton_mask, as there is no mean_MD_skeleton_mask.nii.gz file that
is generated?
randomise -i all_MD_skeletonised -o tbss -m mean_FA_skeleton_mask -d
design.mat -t design.con -n 500 --T2 -V
The output files from doing randomise on the all_MD_skeletonised are in the
exact tbss_tfce.. filenames that are generated from doing randomise on the
all_FA_skeletonised data, and would replace the previous results from the FA
data. When I look at the newly generated tbss_tfce_corrp_tstat1. It looks
similiar to the results from running randomise on the FA files. Would this
be right?
Thanks
Siewmin
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