Dear Markus,
> I am having trouble with making work a convertwarp command.
>
> I have warped dti_FA to T1 and T1 to MNI_2mm.
>
> I then inverted each warp_coef and would like to combine both into
> a MNI_2FA_warpcoef in order to apply this one to pieces out of an
> MNI_Atlas.
>
> I used the following command:
>
> convertwarp --ref=dtifit/dti_FA.nii.gz --warp1=Warps/
> T1_2_FA_warpcoef.nii.gz --warp2=T1/MNI_2T1_warpcoef.nii.gz --
> out=Warps/MNI_2FA_warpcoef.nii.gz
your command looks OK. What does the individual inverted warpfields
look like? Are they both OK?
Jesper
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