On 9 Jul 2009, at 19:16, Josiah Obiero wrote:
> Hi all,
>
> I am trying to compare the binding affinities of two small proteins
> to a bigger receptor protein by interface analyis (computational
> interface alanine scanning by Rosettadock/Robetta server). I was
> wondering:
>
> 1. If it possible to use DDGs of the individual amino acid residues
> to predict binding affinities
>
> 2. If there is another method of predicting binding affinities in
> silico
>
FoldX does a good job for me.
Tassos
> Thanks,
>
> Regards,
>
> Josiah.
>
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