Dear protein.chemist:
Try elbow.builder or phenix.elbow or whatever it is currently called.
It will optimize the geometry.
Good.luck
Bill.Scott
On Tue, July 21, 2009 1:23 pm, protein.chemist protein.chemist wrote:
> Dear All,
>
> What is the best way to find the coordinates of a ligand.
> I do not find teh ligand in Pdb.org. I am trying to draw it in prodrug
> but
> the server is showing error.
> Also if I draw it how do I make sure that the geometry is correct.
> Thanks,
> Mariah
>
> --
> Mariah Jones
> Department of Biochemistry
> University of Florida
>
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
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