Hi, Mark.
I am very sorry to interrupt you again. May be this question is very silly. Now
my procedure shows as follow:
linux-f3p4:/media/disk-1/duhanjian_data/VCI_NC_fslvbm/stats # cluster --
in=fslvbm_s3_tfce_corrp_tstat1.nii.gz --thresh=0.95 --oindex=index
Cluster Index Voxels Z-MAX Z-MAX X (vox) Z-MAX Y (vox) Z-
MAX Z (vox) Z-COG X (vox) Z-COG Y (vox) Z-COG Z (vox)
3 95413 1 35 62 14 44.9 53.4
39.6
2 10 0.953 66 50 69 66.1 49.8
68.8
1 9 0.955 49 50 12 48.9 50
12.4
In this step, I get index.nii.gz file, just as said. Now I want to see the image,
so I use fslview command, show as follow:
linux-f3p4:/media/disk-1/duhanjian_data/VCI_NC_fslvbm/stats # fslview
$FSLDIR/data/standard/MNI152_T1_2mm index -l Red-Yellow -b 0.95,1
When I see the image, all the gray matter area are colour labeled (actually
only three cortical area are different when compare with control group, as
showed above, not all), not concentrate on the above-mentioned coordinate,
such as 35,62,14 and so on. Second, as you
said, this image each voxel is given a number. But I haven¡¯t seen any numbers
in fslview. Am I wrong when I open the index.nii.gz file? So how to open the
index.nii.gz ? How to label the cortical area according to the above-mentioned
coordinate? Thank you very much!
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