I am trying to co-register a T1 anatomical scan with a DTI sequence
(using the b0 scans) in the same patients. The aim is to move across
VOIs drawn on the T1 to look at the same regions on the DTI maps.
Does anyone have experience of this and could you please advise on FNIRT
settings? We have experimented with FLIRT already and the results are
reasonable, but not great so wanted to compare a non-linear registration
to see how big the improvement is.
Also - the initial VOIs were drawn in MRIcroN and we're having big
headaches with formatting and orientation - again if anyone's done this
could you please advise?
Thanks,
Michael
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