Dear Mark,
I get only a file like outputname_all_th4_first.nii.gz. Now if I run
the following:
fslstats result_all_th4_first.nii.gz -V
I get a single number which I presume corresponds to the total volume
of the segmented structures. I would like to have each individual
volume calculated. Is that possible?
Thanks for your support.
All the best
Nick
On Jun 22, 2009, at 10:09 PM, Mark Jenkinson wrote:
> Hi,
>
> Do you have any files like *_firstseg.nii.gz or *_origsegs.nii.gz ?
> These should be the images that you will calculate the volume
> from. Note that they do not start with the structure names as
> they contain all the structures in them.
>
> If you do not have these files please look at the *.e* files in
> the log directory and see if there are any error messages.
>
> All the best,
> Mark
>
>
> On 22 Jun 2009, at 19:49, Nick Papanikolaou wrote:
>
>> Dear Mark,
>>
>> Thanks for your fast response. I tried the run_first_all and all I
>> get is some .vtk and .bvars
>> files. Any idea how can I proceed to calculate the volumes?
>>
>> Nick
>>
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