Dear FSL experts,
First, I want to thank everyone who conducted the course because it was
extremely helpful and everyone was wonderful to work with!
During the FSL workshop I spoke with Mark and Morgan regarding some data
issues I was having.
2 Questions:
1. I am working with fMRI data that I didn't collect so the DICOM conversion
program used for this data creates a an orientation format that FSL cannot
recognize and the qform matrix can't be changed. I believe Morgan mentioned
there was a load dicom program that will convert DICOM to nifti. I tried
looking for it, but I couldn't find it. The only thing I found was the
dcm2nii program. Is dcm2nii the program that I should be using or is there
a way to find the load dicom program?
2. I am working with a diverse set of older adult brains that have large
ventricles. When I run FIRST, some of the subjects have ventricles that are
so large that FIRST cannot do a very good job with the parcellation. I
believe Mark mentioned that they are working on a program to remedy this
that will be out within the next few months. Is there a patch that I could
use in the short term?
Thank you,
Dana
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