Dear All,
I'm trying to quantify the volumes of different subcortical structures. Currently, I'm using
the following to quantify i.e. hippocampal volume:
first_flirt t1.nii.gz t1_std_sub -d
run_first -i t1 -t t1_std_sub.mat -n 50 -o t1_l_hipp_n50 -v -m
/usr/local/fsl/data/first/models_336_bin/l_hipp_bin.bmv
first_utils --singleBoundaryCorr -i t1_l_hipp_n50 -r t1 -p 3 -o t1_l_hipp_n50_bcorr_p3
fslstats t1_l_hipp_n50_bcorr_p3.nii.gz -V
I was wondering if its possible and how to do the previous task for different structures
(i.e. amygdala, putamen, pallidus ...) simultaneously and not its one individually.
Thank you in advance.
Nikos
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