If everything is in NIFTI format and all the software you use is NIFTI
compliant, then the orientations should be dealt with properly. There are a
few cases in SPM where this is not the case, but they do attempt to give a
sensible error message when it occurs.
Best regards,
-John
On Thursday 14 May 2009 21:00, Chris Watson wrote:
> Hello,
> I have a number of mask images from the WFU Pick Atlas. They are labeled
> e.g. ACC_left.img. However, the transformation matrix is different than
> my beta images (the 1st element is +2 instead of -2). When I change
> this, the images get flipped, and thus the image names are incorrect. Is
> there any way I can fix this, so that the voxel numbers match up for all
> images?
>
> thanks,
> Chris
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