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LCG-ROLLOUT  May 2009

LCG-ROLLOUT May 2009

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Subject:

BDII on dCache head note running on CentOS 5

From:

Torsten Harenberg <[log in to unmask]>

Reply-To:

LHC Computer Grid - Rollout <[log in to unmask]>

Date:

Mon, 25 May 2009 09:33:13 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (233 lines)

Dear list,

we have installed a new SE (dCache) running on CentOS 5.

While dCache itself is no problem, the BDII to announce it had some 
trouble. CentOS 5 ships with DB4.3, while the BDII (4.0.1-4) has a 
DB_CONFIG which seems to be written for DB4.2.

I was able to "solve" this by disabeling several options in DB_CONFIG.

The infoProvider from dCache seems to work okay:

[root@grid-se etc]# 
/opt/d-cache/libexec/infoProvider/info-based-infoProvider.sh#
#  LDIF generated by Xylophone v0.1
#
#  XSLT processing using SAXON 6.5.5 from Michael Kay 1 (http://saxon.sf.ne
  t/)
#


dn: 
GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,mds-vo-name=resource,o=grid
objectClass: GlueSETop
objectClass: GlueSE
objectClass: GlueKey
objectClass: GlueSchemaVersion
GlueSEStatus: Production
GlueSEUniqueID: grid-se.physik.uni-wuppertal.de
GlueSEArchitecture: multidisk
GlueSEImplementationName: dcache
GlueSEName: grid-se.physik.uni-wuppertal.de
GlueSEImplementationVersion: 1-9-1-7
GlueSETotalOnlineSize: 4594
GlueSEUsedOnlineSize: 0
GlueForeignKey: GlueSiteUniqueID=wuppertalprod
GlueSchemaVersionMajor: 1
GlueSchemaVersionMinor: 3

dn: GlueSEAccessProtocolLocalID=DCap-gsi-grid-se@gsidcap-grid-seDomain,Glue
  SEUniqueID=grid-se.physik.uni-wuppertal.de,mds-vo-name=resource,o=grid
objectClass: GlueSETop
objectClass: GlueSEAccessProtocol
[...]


but the information is somehow not properly included in the BDII.

[root@grid-se etc]# ldapsearch -x -H ldap://localhost:2170 -b 
mds-vo-name=resource
# extended LDIF
#
# LDAPv3
# base <mds-vo-name=resource> with scope subtree
# filter: (objectclass=*)
# requesting: ALL
#

# search result
search: 2
result: 32 No such object

# numResponses: 1
[root@grid-se etc]#

But:

[root@grid-se etc]# ldapsearch -x -LLL -H ldap://localhost:2170 -b 
GlueSALocalID=dzero,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,mds-vo-name=resource,o=grid
dn: 
GlueSALocalID=dzero,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-
  name=resource,o=grid
objectClass: GlueSATop
objectClass: GlueSA
objectClass: GlueSAPolicy
objectClass: GlueSAState
objectClass: GlueSAAccessControlBase
objectClass: GlueKey
objectClass: GlueSchemaVersion
GlueSALocalID: dzero
GlueSAPath: /pnfs/physik.uni-wuppertal.de/data/dzero
GlueSAType: volatile
GlueSAName: Information for VO dzero
GlueSATotalOnlineSize: 0
GlueSAUsedOnlineSize: 0
GlueSAReservedOnlineSize: 0
GlueSAFreeOnlineSize: 0
GlueSARetentionPolicy: replica
GlueSAAccessLatency: online
GlueSAExpirationMode: neverExpire
GlueSAStateUsedSpace: 0
GlueSAStateAvailableSpace: 0
GlueSAAccessControlBaseRule: dzero
GlueSchemaVersionMajor: 1
GlueSchemaVersionMinor: 3
GlueChunkKey: GlueSEUniqueID=grid-se.physik.uni-wuppertal.de

bdii.log has entries like this:

[root@grid-se var]# tail bdii.log
Time to load DB: 60 s
Grabbing port 2170 for 2172
Error nearby #
==> slapadd: dn="o=grid" (line=5): (65) instantiation of abstract 
objectClass 'GlueTop' not allowed
Error nearby dn: 
GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,mds-vo-name=resource,o=grid
==> slapadd: dn="Mds-Vo-name=local,o=grid" (line=10): (65) instantiation 
of abstract objectClass 'GlueTop' not allowed
Error nearby dn: 
GlueSEAccessProtocolLocalID=DCap-gsi-grid-se@gsidcap-grid-seDomain,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,mds-vo-name=resource,o=grid
==> slapadd: dn="Mds-Vo-name=resource,o=grid" (line=15): (65) 
instantiation of abstract objectClass 'GlueTop' not allowed
Mon May 25 09:29:52 CEST 2009
Sleeping for 60

And the stderr.log file also shows some errors:

[root@grid-se tmp]# ls -l
total 24
-rw-rw-r-- 1 edguser edguser     0 May 25 09:28 currentStats.log
-rw-rw-r-- 2 edguser edguser 18010 May 25 09:28 GIP.ldif
-rw-rw-r-- 1 edguser edguser  3654 May 25 09:28 stderr.log
[root@grid-se tmp]# cat stderr.log
bdb_db_open: unclean shutdown detected; attempting recovery.
entry_check_schema(o=grid): instantiation of abstract objectClass 
'GlueTop' not allowed
slapadd: dn="o=grid" (line=5): (65) instantiation of abstract 
objectClass 'GlueTop' not allowed
entry_check_schema(Mds-Vo-name=local,o=grid): instantiation of abstract 
objectClass 'GlueTop' not allowed
slapadd: dn="Mds-Vo-name=local,o=grid" (line=10): (65) instantiation of 
abstract objectClass 'GlueTop' not allowed
entry_check_schema(Mds-Vo-name=resource,o=grid): instantiation of 
abstract objectClass 'GlueTop' not allowed
slapadd: dn="Mds-Vo-name=resource,o=grid" (line=15): (65) instantiation 
of abstract objectClass 'GlueTop' not allowed
added: 
"GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000003)
added: 
"GlueSEAccessProtocolLocalID=DCap-gsi-grid-se@gsidcap-grid-seDomain,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000004)
added: 
"GlueSEAccessProtocolLocalID=GFTP-grid-se@gridftp-grid-seDomain,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000005)
added: 
"GlueSEControlProtocolLocalID=SRM-grid-se@srm-grid-seDomain,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000006)
added: 
"GlueSALocalID=astrogrid,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000007)
added: 
"GlueSALocalID=atlas,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000008)
added: 
"GlueSALocalID=auger,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000009)
added: 
"GlueSALocalID=c3grid,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(0000000a)
added: 
"GlueSALocalID=dech,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(0000000b)
added: 
"GlueSALocalID=dgtest,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(0000000c)
added: 
"GlueSALocalID=dteam,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(0000000d)
added: 
"GlueSALocalID=dzero,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(0000000e)
added: 
"GlueSALocalID=hepcg,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(0000000f)
added: 
"GlueSALocalID=icecube,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000010)
added: 
"GlueSALocalID=ingrid,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000011)
added: 
"GlueSALocalID=kerndgrid,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000012)
added: 
"GlueSALocalID=medigrid,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000013)
added: 
"GlueSALocalID=ops,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000014)
added: 
"GlueSALocalID=textgrid,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000015)
added: 
"GlueSALocalID=wisent,GlueSEUniqueID=grid-se.physik.uni-wuppertal.de,Mds-Vo-name=resource,o=grid" 
(00000016)
added: 
"GlueServiceUniqueID=httpg://grid-se.physik.uni-wuppertal.de:8443/srm/managerv2,Mds-Vo-name=resource,o=grid" 
(00000017)
Error, entries missing!
   entry 1: o=grid
   entry 2: Mds-Vo-name=resource,o=grid
bdb_db_open: unclean shutdown detected; attempting recovery.
added: 
"Hostname=ldap://grid-se.physik.uni-wuppertal.de:2170,CompressionType=zip,o=infosys" 
(00000003)
added: "o=infosys" (00000001)
added: "CompressionType=zip,o=infosys" (00000002)
added: "Hostname=ldap://grid-se.physik.uni-wuppertal.de:2170,o=infosys" 
(00000004)
[root@grid-se tmp]# pwd
/opt/bdii/var/tmp
[root@grid-se tmp]#

Maybe there is an BDII expert around who can give me a hint what else to 
check.

Thanks a lot and best regards,

   Torsten

-- 
<><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
<>                                                              <>
<> Dr. Torsten Harenberg     [log in to unmask]  <>
<> Bergische Universitaet                                       <>
<> FB C - Physik             Tel.: +49 (0)202 439-3521          <>
<> Gaussstr. 20              Fax : +49 (0)202 439-2811          <>
<> 42097 Wuppertal                                              <>
<>                                                              <>
<><><><><><><>< Of course it runs NetBSD http://www.netbsd.org ><>

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