Sure - just edit the scripts! They're quite straightforward. Cheers
--------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington,
Oxford. OX3 9 DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask]
http://www.fmrib.ox.ac.uk/~steve
----------------------
On 27 May 2009, at 06:54, Jürgen Hänggi
<[log in to unmask]> wrote:
> Dear FSL experts
>
> We created a DTI template that includes the whole brain stem and the
> upper
> part of the spinal cord and would like to affine register the FA
> maps on
> this template (instead of the MNI152 template) using the
> tbss_3_postreg
> script.
>
> Is there a possibility to force tbss_3_postreg to use our customized
> template instead of the MNI152 template, or should I do that with
> FLIRT?
>
> Thanks in advance
> Best regards
>
> Jürgen
>
> ---
> ---
> ----------------------------------------------------------------------
> Juergen Haenggi
> Ph.D. (Dr. des.)
> Division Neuropsychology
> Institute of Psychology
> University of Zurich
> Binzmuehlestrasse 14, PO Box 25
> 8050 Zurich, Switzerland
> 0041 44 635 73 97 (phone office)
> 0041 76 445 86 84 (phone mobile)
> 0041 44 635 74 09 (fax office)
> BIN 4.D.04 (office room number)
> j.haenggi[at]psychologie.uzh.ch (email)
> http://www.psychologie.uzh.ch/neuropsy/ (website)
> http://www.juergenhaenggi.ch (private website)
>
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