Hi,
I would recommend to do all the preprocessing (motion correction, bet)
prior running Melodic, since the defaults are set to work optimally with
human brains, but this is suboptimal for other animals. As far as I am
aware of, Melodic does not use the correction parameter anyway, so you
would not loose anything, but you might ensure optimal motion correction.
hope this helps,
wolf
Roman Loonis wrote:
> I am analyzing resting network activity in the macaque monkey by applying fsl's MELODIC
> ICA to functional data. The MELODIC registration, which uses flirt, fails to appropriately
> register the images. I can only properly align the two images in FLIRT when I use the cost
> function "normalised correlation." Unfortunately, I do not have access to this option in
> MELODIC ICA_gui. Is there any easy way I can include this cost function into MELODIC ICA's
> registration?
>
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