I am analyzing resting network activity in the macaque monkey by applying fsl's MELODIC
ICA to functional data. The MELODIC registration, which uses flirt, fails to appropriately
register the images. I can only properly align the two images in FLIRT when I use the cost
function "normalised correlation." Unfortunately, I do not have access to this option in
MELODIC ICA_gui. Is there any easy way I can include this cost function into MELODIC ICA's
registration?
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