Here is an instruction page on how to install FSL under Cygwin:
http://www.sph.sc.edu/comd/rorden/workshop/fsl/install/index.html
I would personally recommend either using the VMWare Player image (we
do that with students that have Windows) and switching with your
MATLAB to Linux. If you're not really comfortable with a Linux distro,
you can also use Mac's since they have the same Unix-layer, the X11
systems required for the FSL GUI and work perfectly good with MATLAB
and FSL (our center runs all Mac).
Once you install Cygwin you have a very Linux/Unix-like command line
on Windows however some things (like X11) don't always work perfectly.
Evi Vanoost
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(585) 275-4549
On May 12, 2009, at 4:39 AM, Zihua Su wrote:
> Hi all,
>
> I am asking for help regarding to running the code under windows.
>
> Basically, I am new to FSL and Linux environment. So, i wanna have
> the FSL code work under windows, at somewhere I am most familiar with.
> My problem is that I wanna use my matlab code and C code in windows
> to do some further test on the output from FSL.
>
> My questions ares:
>
> 1) Where can i find FSL 3.3, so i can use cygwin to run the code
> under windows.
> 2) Do you have some nice idea to let me access the FSL output from
> Windows. I think an additional questions is how to read .nii format.
>
> Many thanks, and sorry if I didn't make myself clear.
>
> Richard
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