Hello,
do you happen to know if there is a relatively easy way in FSL how to
idicate which slices and particular time series should be cut off from
the analysis?
I've analyzed the data for 50 subjects but found that they were moving
a lot and therefore even if I would set quite lenient criteria and
exclude everybody who moved more than 2 mm, I would end up with only
29 subjects. This is way too much and that is why I was thinking about
cutting off the slices with the biggest movement (fslsplit &fslmerge).
However, if I do this a problem with the time series comes out. Is
there an easy way how to take care about this or do I have to go to
each particular subject's design, exclude the particular time series
and rerun the whole analysis?
Do you also happen to have some guidelines about the exclusion
criteria for motion correction? In some articles about adult
participants I've seen exclusion criteria 1mm or 1degree but this
seems to be too strict for my subjects.
Many thanks for your help.
Klara
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