Hi,
Thanks for your response.
Please let me know if you have any further suggestions.
Thank you!
Following is the complete log file:
Feat main script
/bin/cp /tmp/feat_hsdJH3.fsf design.fsf
/Applications/fsl/bin/feat_model design
mkdir .files;cp /Applications/fsl/doc/fsl.css .files;ln -s
/Applications/fsl/doc/images .files/images
/Applications/fsl/bin/fsl_sub -T 14 -l logs -N feat2_pre
/Applications/fsl/bin/feat
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat/design.fsf -D
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat -I 1
-prestats
25445
/Applications/fsl/bin/fsl_sub -T 42 -l logs -N feat3_film -j 25445
/Applications/fsl/bin/feat
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat/design.fsf -D
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat -I 1 -film
35509
/Applications/fsl/bin/fsl_sub -T 4 -l logs -N feat4_post -j 35509
/Applications/fsl/bin/feat
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat/design.fsf -D
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat
-poststats 0 0
35583
/Applications/fsl/bin/fsl_sub -T 30 -l logs -N feat5_reg -j 25445
/Applications/fsl/bin/feat
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat/design.fsf -D
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat -I 1 -reg
35680
/Applications/fsl/bin/fsl_sub -T 1 -l logs -N feat5_stop -j
25445,35509,35583,35680 /Applications/fsl/bin/feat
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat/design.fsf -D
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp.feat -stop
Prestats
/Applications/fsl/bin/fslmaths
/Users/Wey/Desktop/Data/EJ0021/ASL_fMRI/00105/EJ0021_00105_bp
prefiltered_func_data -odt float
Total original volumes = 140
Deleting 1 volume(s) - BE WARNED for future analysis!
/Applications/fsl/bin/fslroi prefiltered_func_data prefiltered_func_data 1 139
/Applications/fsl/bin/fslroi prefiltered_func_data example_func 69 1
/Applications/fsl/bin/fslstats prefiltered_func_data -p 2 -p 98
0.000000 530.980530
/Applications/fsl/bin/fslmaths prefiltered_func_data -thr 53.098053 -Tmin
-bin mask -odt char
/Applications/fsl/bin/fslstats prefiltered_func_data -k mask -p 50
445.186340
/Applications/fsl/bin/fslmaths mask -dilF mask
/Applications/fsl/bin/fslmaths prefiltered_func_data -mas mask
prefiltered_func_data_thresh
/Applications/fsl/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
/Applications/fsl/bin/susan prefiltered_func_data_thresh 333.889755
2.12314225053 3 1 1 mean_func 333.889755 prefiltered_func_data_smooth
/Applications/fsl/bin/fslmaths prefiltered_func_data_smooth -mas mask
prefiltered_func_data_smooth
/Applications/fsl/bin/fslmaths prefiltered_func_data_smooth -mul
22.462504128 prefiltered_func_data_intnorm
/Applications/fsl/bin/perfusion_subtract prefiltered_func_data_intnorm
prefiltered_func_data_perfsub
Warning - odd number of timepoints in input data - will ignore last timepoint
/Applications/fsl/bin/fslmaths prefiltered_func_data_perfsub filtered_func_data
/Applications/fsl/bin/fslmaths filtered_func_data -Tmean mean_func
/bin/rm -rf prefiltered_func_data*
Stats
/Applications/fsl/bin/film_gls -rn stats -noest filtered_func_data
design.mat 1000.0
Log directory is: stats
Num scans = 138, design matrix rows = 139
An exception has been thrown
size of design matrix does not match number of scans
Error: FILM did not complete - it probably ran out of memory
Post-stats
/Applications/fsl/bin/contrast_mgr stats design.con
** ERROR (nifti_image_read): failed to find header file for
'stats/sigmasquareds'
** ERROR: nifti_image_open(stats/sigmasquareds): bad header info
Error: failed to open file stats/sigmasquareds
ERROR: Could not open image stats/sigmasquareds
Image Exception : #22 :: Failed to read volume stats/sigmasquareds
An exception has been thrown
Failed to read volume stats/sigmasquaredsTrace: read_volume4DROI;
ContrastMgr::Load; ContrastMgr::run.
child process exited abnormally
while executing
"exec sh -c "${FSLDIR}/bin/remove_ext $cleanedargs" "
(procedure "remove_ext" line 8)
invoked from within
"remove_ext [ lsort -dictionary [ imglob zstat*.* ] ] [ lsort -dictionary [
imglob zfstat*.* ] ] "
(procedure "feat5:proc_poststats" line 51)
invoked from within
"feat5:proc_poststats $RERUNNING $STDSPACE "
("-poststats" arm line 6)
invoked from within
"switch -- [ lindex $argv $argindex ] {
-I {
incr argindex 1
set session [ lindex $argv $argindex ]
}
-D {
incr argindex 1
set..."
("for" body line 2)
invoked from within
"for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argindex 1
set ses..."
(file "/Applications/fsl/bin/feat" line 137)
Registration
/bin/mkdir -p reg
/Applications/fsl/bin/fslmaths
/Users/Wey/Desktop/Data/EJ0021/Anatomy/00036/m_EJ0021_00036_T1W highres
/Applications/fsl/bin/flirt -ref highres -in example_func -out
example_func2highres -omat example_func2highres.mat -cost corratio -dof 7
-searchrx -180 180 -searchry -180 180 -searchrz -180 180 -interp trilinear
/Applications/fsl/bin/convert_xfm -inverse -omat highres2example_func.mat
example_func2highres.mat
/Applications/fsl/bin/slicer example_func2highres highres -s 2 -x 0.35
sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y
0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png
-z 0.55 slk.png -z 0.65 sll.png ; /Applications/fsl/bin/pngappend sla.png +
slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png +
sli.png + slj.png + slk.png + sll.png example_func2highres1.png ;
/Applications/fsl/bin/slicer highres example_func2highres -s 2 -x 0.35
sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y
0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png
-z 0.55 slk.png -z 0.65 sll.png ; /Applications/fsl/bin/pngappend sla.png +
slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png +
sli.png + slj.png + slk.png + sll.png example_func2highres2.png ;
/Applications/fsl/bin/pngappend example_func2highres1.png -
example_func2highres2.png example_func2highres.png; /bin/rm -f sl?.png
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