Hi Gwenaelle,
We're using the newest version (I believe), so it's all in the FA/ directory.
When I do ls $FSLDIR/data/standard/ I get the following:
ls /usr/local/fsl/data/standard/
avg152T1_brain.nii.gz
avg152T1.nii.gz
FMRIB58_FA_1mm.nii.gz
FMRIB58_FA-skeleton_1mm.nii.gz
LowerCingulum_1mm.nii.gz
MNI152lin_T1_1mm_brain.nii.gz
MNI152lin_T1_1mm.nii.gz
MNI152lin_T1_1mm_subbr_mask.nii.gz
MNI152lin_T1_2mm_brain_mask.nii.gz
MNI152lin_T1_2mm_brain.nii.gz
MNI152lin_T1_2mm.nii.gz
MNI152_T1_0.5mm.nii.gz
MNI152_T1_1mm_brain_mask.nii.gz
MNI152_T1_1mm_brain.nii.gz
MNI152_T1_1mm_first_brain_mask.nii.gz
MNI152_T1_1mm.nii.gz
MNI152_T1_2mm_b0.nii.gz
MNI152_T1_2mm_brain_mask_deweight_eyes.nii.gz
MNI152_T1_2mm_brain_mask_dil.nii.gz
MNI152_T1_2mm_brain_mask.nii.gz
MNI152_T1_2mm_brain.nii.gz
MNI152_T1_2mm_edges.nii.gz
MNI152_T1_2mm_eye_mask.nii.gz
MNI152_T1_2mm_LR-masked.nii.gz
MNI152_T1_2mm.nii.gz
MNI152_T1_2mm_skull.nii.gz
MNI152_T1_2mm_strucseg.nii.gz
MNI152_T1_2mm_strucseg_periph.nii.gz
tissuepriors
Additionally, I tried rerunning tbss_1_preproc and then moving on to
tbss_2_reg, and still got a similar error. I have tried doing tbss_2_reg
from both cd tbss/ and cd tbss/FA/ as I'm not sure which is correct, but I
get the same error either way:
tbss_2_reg -T
/bin/cp: cannot create regular file `FA/target.nii.gz': No such file or
directory
/usr/local/fsl/bin/tbss_2_reg: line 127: cd: FA: No such file or directory
K1001_FA_FA_to_target
16299
Let me know if you need any more information, and thanks for any help you
can offer!
-Garth
|