Hi Anna,
no, this is *only* if you haven't run the second step yet...
What is exactly the problem with these two images, is it the brain extraction, the segmentation or the registration?
Cheers,
Gwenaelle
--- En date de : Lun 6.4.09, Anna Barnes <[log in to unmask]> a écrit :
> De: Anna Barnes <[log in to unmask]>
> Objet: [FSL] Another question about fslvbm_1_bet
> À: [log in to unmask]
> Date: Lundi 6 Avril 2009, 15h15
> Having run fslvbm_2_template and checked template_4D_GM
> image it seems there are 2 images that are a problem. Have
> fixed problem and now need to run fslvbm_1_bet etc......
>
> In the instructions it says
>
> "If you later want to add more subjects to your
> analysis then just put the new subjects' images inside
> the toplevel directory (e.g. my_fsl_vbm) and re-run
> fslvbm_1_bet. Don't forget to update template_list if
> necessary."
>
> Can I just check with someone that if I do this it
> won't do ALL the images in the top level directory again
> (I have rather a lot).
>
> Thanks
>
> Anna
>
>
> --
> Anna Barnes, PhD
> Research Associate (+441223 764676)
>
> Brain Mapping Unit (Sir William Hardy Bldg.)
> Dept. of Psychiatry.
> c/o Experimental Psychology
> University of Cambridge.
> Downing Site, Downing St.
> Cambridge, CB2 3EB
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