Two suggestions...
Check that the coordinate fields in your pqr file are separated by
spaces (some pdb to pqr converters don't always do this in my hands,
probably due to large negative coordinate values). Also, try using your
.pqr file and .in file to run apbs from the command line and see if it
segfaults there.
Pete
Talavera wrote:
> Hi there,
>
> Whenever I tried in Pymol to load the .pqr file to represent the
> electrostatic surface the program crashes with Segmentation fault. I am
> using a laptop with Ubuntu 8.10. Does any of you have any suggestion for
> this problem.
>
> Thanks a lot in advanced.
> Ariel
>
> *************************************************
> Ariel Talavera Perez, PhD
> Center of Molecular immunology
> calle 216 esq. A 15, Atabey, Playa
> Havana 11600, CUBA
> email: [log in to unmask]
> *************************************************
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