This may be a silly question (usually doesn't stop me), but does running
pymol single-threaded (or on a single-core system) make any difference?
I was a bit surprised to see pthread in the stack trace you linked to.
Pete
Witek Kwiatkowski wrote:
> Hi,
>
> I think that this is related to general pymol problem in ubuntu 8.10.
> We had exchanged couple emails with Warren about this but I have not
> heart back from him since.
> It seems that there is a bug in pymol or Tkinter library and whenever
> pymol tries to open special kind
> of window it crashes with segfault. (try to open Help -> About Pymol)
> (that bug is present in both python 2.4 an 2.5
> and none of pymol versions works.)
> see also
> https://lists.ubuntu.com/archives/universe-bugs/2008-November/019193.html
>
> Witek
>
> Pete Meyer wrote:
>> Two suggestions...
>> Check that the coordinate fields in your pqr file are separated by
>> spaces (some pdb to pqr converters don't always do this in my hands,
>> probably due to large negative coordinate values). Also, try using your
>> .pqr file and .in file to run apbs from the command line and see if it
>> segfaults there.
>>
>> Pete
>>
>> Talavera wrote:
>>
>>> Hi there,
>>>
>>> Whenever I tried in Pymol to load the .pqr file to represent the
>>> electrostatic surface the program crashes with Segmentation fault. I am
>>> using a laptop with Ubuntu 8.10. Does any of you have any suggestion for
>>> this problem.
>>>
>>> Thanks a lot in advanced.
>>> Ariel
>>>
>>> *************************************************
>>> Ariel Talavera Perez, PhD
>>> Center of Molecular immunology
>>> calle 216 esq. A 15, Atabey, Playa
>>> Havana 11600, CUBA
>>> email: [log in to unmask]
>>> *************************************************
>>>
>>
>>
>
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