Hi,
I think that this is related to general pymol problem in ubuntu 8.10.
We had exchanged couple emails with Warren about this but I have not
heart back from him since.
It seems that there is a bug in pymol or Tkinter library and whenever
pymol tries to open special kind
of window it crashes with segfault. (try to open Help -> About Pymol)
(that bug is present in both python 2.4 an 2.5
and none of pymol versions works.)
see also
https://lists.ubuntu.com/archives/universe-bugs/2008-November/019193.html
Witek
Pete Meyer wrote:
> Two suggestions...
> Check that the coordinate fields in your pqr file are separated by
> spaces (some pdb to pqr converters don't always do this in my hands,
> probably due to large negative coordinate values). Also, try using your
> .pqr file and .in file to run apbs from the command line and see if it
> segfaults there.
>
> Pete
>
> Talavera wrote:
>
>> Hi there,
>>
>> Whenever I tried in Pymol to load the .pqr file to represent the
>> electrostatic surface the program crashes with Segmentation fault. I am
>> using a laptop with Ubuntu 8.10. Does any of you have any suggestion for
>> this problem.
>>
>> Thanks a lot in advanced.
>> Ariel
>>
>> *************************************************
>> Ariel Talavera Perez, PhD
>> Center of Molecular immunology
>> calle 216 esq. A 15, Atabey, Playa
>> Havana 11600, CUBA
>> email: [log in to unmask]
>> *************************************************
>>
>
>
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