fslview has little letters next to each image indicating the
orientation. If those letters are correct, then the orientation is correct.
doug
Rami Niazy wrote:
> Ok... so there is nothing wrong the conversion, just a matter of
> swapping the dimensions. Thanks Mike.
>
> R
>
> On Mon, Mar 30, 2009 at 9:18 AM, Michael T Rubens
> <[log in to unmask] <mailto:[log in to unmask]>>
> wrote:
>
> Thats right. If you reslice the mprage to match your epi's it will
> look more like what you'd expect.
>
> M
>
>
> On Sun, Mar 29, 2009 at 10:46 PM, Rami Niazy <[log in to unmask]
> <mailto:[log in to unmask]>> wrote:
>
>
> Hi,
>
> I am trying to use the latest built of mri_convert (OS X) to
> convert dicom images from a siemens trio into a fsl-usable
> format. The EPI images convert & display fine. However, an
> anatomical T1 MPRAGE appears in fslview with the different
> views messed up: Axial view with the anterior-posterior
> displayed left-right in the top left panel, and the
> corresponding coronal in the right panel and the sagittal in
> the bottom. The orientation seems to be correct in as far as
> the posterior-anterior, superior-inferior and left-right
> information is preserved... it is just displayed awkwardly. A
> screen capture of both the epi and mprage scans is attached.
> Any feedback is much appreciated.
>
> Thanks,
>
> Rami
>
>
>
>
> --
> Research Associate
> Gazzaley Lab
> Department of Neurology
> University of California, San Francisco
>
>
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