Hi Saad
Thanks a lot
Regards
Jürgen
On 10.3.2009 11:33 Uhr, "Saad Jbabdi" <[log in to unmask]> wrote:
> Hi Jürgen,
>
> You can use eddy_correct for that.
>
> First, concatenate your data (with fslmerge)
> Then, run eddy_correct, which will register each volume to a reference
> volume using 12DOF affine transformations.
> Then split your data again (with fslroi) and average them using fslmaths
>
> Cheers,
> Saad.
>
>
> On 10 Mar 2009, at 10:22, Jürgen Hänggi wrote:
>
>> Dear FSL experts
>>
>> I would like to coregister repeated DTI acquisitions with FSL. Which
>> tool do
>> I have to use? The registration card of the FEAT tool or is there a
>> special
>> command to register and average repeated DTI sequences?
>>
>> Thanks in advance
>> Regards
>> Jürgen
>>
>> ----------------------------------------------------------------------------
>> Juergen Haenggi
>> Ph.D. (Dr. des.)
>> Division Neuropsychology
>> Institute of Psychology
>> University of Zurich
>> Binzmuehlestrasse 14, PO Box 25
>> 8050 Zurich, Switzerland
>> 0041 44 635 73 97 (phone office)
>> 0041 76 445 86 84 (phone mobile)
>> 0041 44 635 74 09 (fax office)
>> BIN 4.D.04 (office room number)
>> j.haenggi[at]psychologie.uzh.ch (email)
>> http://www.psychologie.uzh.ch/neuropsy/ (website)
>> http://www.juergenhaenggi.ch (private website)
>>
>> This e-mail (and any attachment/s) contains confidential and/or
>> privileged
>> information. If you are not the intended recipient (or have received
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>> e-mail in error) please notify the sender immediately and destroy this
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>>
>
> Saad Jbabdi
> Oxford University FMRIB Centre
>
> JR Hospital, Headington, OX3 9DU, UK
> +44 (0) 1865 222545 (fax 717)
> www.fmrib.ox.ac.uk/~saad
----------------------------------------------------------------------------
Juergen Haenggi
Ph.D. (Dr. des.)
Division Neuropsychology
Institute of Psychology
University of Zurich
Binzmuehlestrasse 14, PO Box 25
8050 Zurich, Switzerland
0041 44 635 73 97 (phone office)
0041 76 445 86 84 (phone mobile)
0041 44 635 74 09 (fax office)
BIN 4.D.04 (office room number)
j.haenggi[at]psychologie.uzh.ch (email)
http://www.psychologie.uzh.ch/neuropsy/ (website)
http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged
information. If you are not the intended recipient (or have received this
e-mail in error) please notify the sender immediately and destroy this
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