I ran into this recently.
I was told it is a bug in 4.1.0.
Upgrading to 4.1.2 fixed this problem.
-roddy
>>> Steve Smith <[log in to unmask]> 3/9/2009 3:19 AM >>>
Hi - looks like maybe your installation is not correct - did you run
FEEDS? Maybe you don't have "dc" on your computer?
Cheers
On 9 Mar 2009, at 08:13, Mathias Engstrom wrote:
> Hi Everyone,
>
> We Just changed from an older version of FSL (dońt remember the
exact
> version number) to 4.1.0. Sadly I've now started to run into some
> problems.
> When running tbss_1_preproc everything works fine, but when using
> tbss_2_reg
> the process terminates with a number like:
>
> ../TEST/$ tbss_2_reg -n
> CON_008_FA_to_CON_008_FA
> CON_009_FA_to_CON_008_FA
> CON_008_FA_to_CON_009_FA
> CON_009_FA_to_CON_009_FA
> 16813
> ../TEST/$
>
> and when running tbss_3_postreg I get error messages like:
>
> finding best target
> dc: stack empty
> dc: stack empty
> dc: stack empty
> dc: stack empty
> CON_008_FA 0 0
> ...
> CON_NeoBIG_008_FA
> ** ERROR (nifti_image_read): failed to find header file for
> 'CON_008_FA_to_CON_008_FA_warp'
> ** ERROR: nifti_image_open(CON_008_FA_to_CON_008_FA_warp): bad
> header info
> Error: failed to open file CON_008_FA_to_CON_008_FA_warp
>
> Which I guess is quite expected if tbss_2_reg does not finish
> properly. I
> ́ve tried running tbss_2_reg with both the -n option and the -t
> option. Same
> result. I ́ve also changed the number of subjects from 2 to 16. Same
> result.
>
> Anyone who knows what this can be due to, or have been having the
same
> problems themself?
>
> /Mathias
>
---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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