Hi,
Yes, if you look in $FSLDIR/data/atlases/Juelich.xml
you will see the listing of labels - in this file they start at 0 but
as seen in FSLView they start at 1. I guess this is confusing - we'll
have a look into that.
Cheers.
On 26 Mar 2009, at 19:32, Dost Ongur wrote:
> Hello,
> we are working on a project in the primary auditory cortex and
> wanted to use
> the Juelich Histological atlas in Featquery to extract information.
> The 6
> subregions of this region (TE1.0, 1.1, 1.2 - each left and right) are
> labeled as regions 24 through 29 in the Featquery atlas options. For
> completeness, we looked up the same regions in the Juelich atlas
> images in
> /usr/local/fsl/lib/atlases/Juelich/ and the labeling of the regions
> appeared
> to be wrong (going from 25 through 30). Region 24 is in the
> hippocampus in
> those images.
> If people have been using the atlas, they may want to check that
> their ROIs
> are being overlaid appropriately before interpreting the data.
> Dost Ongur
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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