Hi - most likely tbss_skeleton is creashing because you are running
out of RAM/swap - see the big RAM entry on the FSL FAQ.
Cheers.
On 27 Feb 2009, at 21:31, SUBSCRIBE FSL Anonymous wrote:
> I tried the same command again, this time trying to catch the error
> earlier.
> Any thoughts on why it's killed at line 94?
>
> $ tbss_deproject FA_results_095.nii.gz 3
> de-projecting <skeleton-space-image> into all_FA (nonlinearly aligned)
> subject space
> output will be FA_results_095_to_all_FA
> /home/fsl4/fsl/bin/tbss_deproject: line 94: 25818 Killed
> $FSLDIR/bin/tbss_skeleton -i mean_FA -p `cat thresh.txt`
> mean_FA_skeleton_mask_dst $FSLDIR/data/standard/LowerCingulum_1mm
> all_FA
> ${IN}_tmp -D $IN
> de-projection done
> now creating inverse warp fields...
> ** ERROR (nifti_image_read): failed to find header file for
> 'FA_results_095_to_all_FA'
> ** ERROR: nifti_image_open(FA_results_095_to_all_FA): bad header info
> Error: failed to open file FA_results_095_to_all_FA
> Cannot open volume FA_results_095_to_all_FA for reading!
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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