Hi Joe,
Do you have insertions (e.g. residues 62A, 62B, 62C) or deletions (e.g.
residues 42 and 45) which are connected? These may cause broken
connectivities in pymol. In this case, I would renumber the pdb file and
see how it then displays.
Best regards,
Herman
-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
Joe Xtal
Sent: Monday, March 02, 2009 5:08 PM
To: [log in to unmask]
Subject: [ccp4bb] Broken chain in Pymol display
Hi all,
I tried to display a refined structure (final steps in phenix.refine) in
Pymol, but several places are not connected. BTW, the structure displays
normally in Coot and bond angle and length deviation are below 1.0 and
0.006, respectively.
Thank you,
Joe
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