Hi all,
yes, re-running jobs was the issue. So, creating a new job did the
trick.
Thanks for all the various feedback!
Jan
On Mar 6, 2009, at 12:43 AM, Paul Fyfe wrote:
> Hi Jan,
> I had exactly the same problem. It happens (for me) when you try and
> re-run a job created for a previous version of refmac. All you need
> to do is create a new Refmac job and it should work.
>
> Cheers,
> Paul
>
>
> ------------------------------------------------------------------------------------
> Dr Paul K. Fyfe
> Division of Biological Chemistry and Drug Discovery
> College of Life Sciences
> MSI/WTB Complex
> University of Dundee
> Dow Street
> Dundee DD1 5EH
> ------------------------------------------------------------------------------------
>
>>>> Jan Abendroth <[log in to unmask]> 03/06/09 6:40 AM >>>
> Hi all,
> I keep on getting the following error message when I try to start a
> refmac job through ccp4i with ccp4 version 6.1.1. This initially only
> happened in a linux installation, now all of a sudden appeared in a
> osx installation as well. The interface hangs when starting the job.
> It also occurs for files that refined w/o any problems before. Any
> ideas what is going on here?
>
> Thanks for any input.
>
> Jan
>
> ~~~~~~~
>
> Top level CCP4 directory is /usr/local/ccp4-6.1.1
> Using CCP4 programs from /usr/local/ccp4-6.1.1/bin
> can't set "ATOM(0)": variable isn't array
> while executing
> "set [subst $root]([subst $indx0]) """
> (procedure "ExecuteScript" line 50)
> invoked from within
> "ExecuteScript $system(SCRIPT)"
> ("script" arm line 8)
> invoked from within
> "switch $system(RUN_MODE) \
> script {
>
> source [file join $env(CCP4I_TOP) src execute.tcl]
> source [file join $env(CCP4I_TOP) src job_utils..."
> (file "/usr/local/ccp4-6.1.1/share/ccp4i/bin/ccp4ish.tcl" line
> 145)
> invoked from within
> "source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]"
> (file "/usr/local/bin/ccp4ish" line 12)
>
> --
> Jan Abendroth
> deCODE biostructures
> Seattle / Bainbridge Island WA, USA
> work: JAbendroth_at_decode.is
> home: Jan.Abendroth_at_gmail.com
>
>
> The University of Dundee is a registered Scottish charity, No:
> SC015096
--
Jan Abendroth
deCODE biostructures
Seattle / Bainbridge Island WA, USA
work: JAbendroth_at_decode.is
home: Jan.Abendroth_at_gmail.com
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