Hi Eric,
You can try the Dundee prodrg server:
http://davapc1.bioch.dundee.ac.uk/prodrg/
Good luck,
Eric
__________________________
Eric Larson, PhD
MSGPP Consortium
Department of Biochemistry
Box 357742
University of Washington
Seattle, WA 98195
On Tue, 3 Mar 2009, Eric Liu wrote:
> Hi All,
>
> I downloaded a stausporine PDB file and used elbow to generate the cif file
> for my ccp4 refinement. It gave the following error message:
>
>
> 0:00 Bondise Bondise Bondise Bondise Bondise Bondise Bondise Bondise Bondise
> B
>
> Failed to determine the bonding of a fragment of the molecule.
>
> PDB file elbow.stau_pdb.001.pdb written.
> Bonding file elbow.stau_pdb.001.bonding.py written.
>
> Edit bonding file to reflectALTERNATIVELY
>
> Re-run eLBOW with the --reel option and the molecule wil be loaded
> into REEL. Edit the bonds and save the results as "fixed.cif" to
> allow eLBOW to load the bonding. the desired bond.
>
>
>
> I guess stausporine was quite complicated molecule. How do I rerun the elbow
> with reel option? What other programs you can use to generate compound
> library file?
>
>
> Thanks!
>
> Eric
>
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