Hi,
If you run FEAT you will find a 4D NIFTI file called
filtered_func_data in the output .feat directory that you can do
further analysis on.
You will probably not find it trivial to insert your own functions
into the FEAT pipeline unless you are very into TCL and c++, but how
hard this is depends on exactly what you are wanting to do.
Cheers.
On 26 Mar 2009, at 10:50, Asaf Stahl wrote:
> Hello!
>
> I'm new in FSL
> For my senior project I need to check if there is a correlation
> between a
> certain behavior function and ROI's in the brain.
> I want to use FSL for this by getting the data from FSL after the pre-
> processing level and then compare it with the behavior function.
>
> Can FSL save the data after the pre-processing level (I mean the
> high-pass
> filter, the motion correction etc. ), in a way which I can use it in
> MATLAB?
>
> or,
>
> Is there a way that I can insert a function of my own into the
> processing level
> in FSL?
>
> In short, how can I integrate my own processing with the FSL
> processing?
>
> Thank you
> Asaf.
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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