Try Freesurfer, it does pretty decent cortical and subcortical
segmentation and may contain most of the tissue types/structures you
need.
Quoting "firdaus.janoos" <[log in to unmask]>:
> Hello,
>
> Is anybody aware of any standard / freely available tools to segment a
> complete head MR image ? Specifically, I am interested in extracting the
> different components like the skull, cerebrum, cerebellum, limbic system,
> corpus callosum, brain stem etc from an image that contains these ? A tool
> that does even partial segmentations of these would be nice.
>
> Any pointers would be appreciated.
>
> Thanks,
> -firdaus
>
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