Hi - for more information on how to run FNIRT to get warp fields, and
to apply them, see the FNIRT documentation, and also the tbss_*
scripts in $FSLDIR/bin, for examples.
Cheers, Steve.
On 30 Jan 2009, at 16:57, Thomas Doke wrote:
> Dear Experts,
> I would like to warp and create individual 3D nii images by applying
> the non-
> linear transforms, in the *_FA_FA_to_target_warp files estimated from
> tbss_2_reg, to other images in native space. I'm guessing this
> would be
> similar to the first stage of tbss_3_postreg before the creation of
> 4D files. I
> have tried using the non_FA script to do this, however I would like
> to create
> individual images for other processing, while it just creates a
> single 4D file.
>
> Best wishes,
>
> Tom Doke
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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