Hi,
I am using FLIRT linear registration tool for generating T2map.
I've got into several problems while I have been doing it. Besides complete
registration failure, I have seen 'blank', somehow 'mirror images in each
slice',or 'no matching with reference images'. One of examples is attached.
Here is what I did for my analysis.
flirt -ref xx -in xx -out xx -dof 6 -cost mutualinfo -omat xx.mat
flirt -ref xx -in xxx -out xxxx -init xx.mat -applyxmf
Is anybody who has seen something like this problem?
Thank you for your time,
Mi Jung
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