Yep,
I did indeed start from the beginning of tbss after updating and the
result was the files I mentioned below. Should I also redo the
eddy_correction and dtifit?
Hanne Antila
[log in to unmask]
0500-563674
----- Original Message -----
From: Steve Smith <[log in to unmask]>
Date: Wednesday, February 25, 2009 11:03 am
Subject: Re: [FSL] problem with TBSS/tbss_3_postreg
To: [log in to unmask]
> Hi - if you have just upgraded then I suggest starting from
> scratch.
> It sounds like your registration never completed. for some reason.
> Cheers.
>
>
>
> On 25 Feb 2009, at 06:45, Hanne Antila wrote:
>
> > Hi,
> >
> > I thought about that and updated to the newest version.
> Unfortunately> this didn'n help and the problem remains the same.
> So I guess the
> > registration is then the issue here and now when I think about
> it, the
> > registration did finish really fast. It isn't the data anyway,
> since I
> > already tried with different dataset.
> >
> > The FA file contains these kinds of files
> >
> > Best.mfs
> > Subject_FA.nii.gz
> > Subject_FA_mask.nii.gz
> > subject_FA_to_target_warp.mfs
> > target.nii.gz
> >
> > Those subject_FA_to_target_warp.mfs -files are size 0 bites and
> empty> when viewed in gedit. Does someone has any pointers? All
> help will be
> > appreciated!
> >
> > Hanne Antila
> > [log in to unmask]
> > 0500-563674
> >
> > ----- Original Message -----
> > From: Steve Smith <[log in to unmask]>
> > Date: Tuesday, February 24, 2009 10:36 pm
> > Subject: Re: [FSL] problem with TBSS/tbss_3_postreg
> > To: [log in to unmask]
> >
> >> HI - are you maybe mixing up FSL versions? *_FAi images are from
> >> the
> >> old version. Either that or the registrations didn't complete
> >> correctly.Cheers.
> >>
> >> On 24 Feb 2009, at 12:53, Hanne Antila wrote:
> >>
> >>> Hi,
> >>>
> >>> I'm a rookie in TBSS and I have run it successfully twice.
> >> However,
> >>> now I
> >>> ran into some problems.
> >>>
> >>> I first ran tbss_1_preproc *.nii.gz and tbss_2_reg -T as
> >> recommended
> >>> and
> >>> everything seemed ok, no error messages.
> >>>
> >>> The problems emerged, when I ran tbss_3_postreg -S. The error
> >>> messages are
> >>> below. Has someone had similar problems? My data consists of 30
> >> FA-
> >>> images.
> >>>
> >>> hanne@gyrus:~/DTI_Irina/TBBS$ tbss_3_postreg -S
> >>> using pre-chosen target for registration
> >>> transforming all FA images into MNI152 space
> >>> dti_FA_C01_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C01_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C01_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C01_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C01_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C01_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C02_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C02_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C02_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C02_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C02_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C02_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C03_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C03_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C03_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C03_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C03_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C03_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C04_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C04_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C04_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C04_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C04_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C04_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C06_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C06_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C06_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C06_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C06_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C06_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C07_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C07_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C07_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C07_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C07_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C07_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C09_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C09_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C09_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C09_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C09_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C09_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C10_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C10_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C10_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C10_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C10_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C10_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C12_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C12_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C12_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C12_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C12_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C12_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C13_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C13_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C13_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C13_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C13_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C13_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C14_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C14_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C14_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C14_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C14_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C14_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C15_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C15_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C15_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C15_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C15_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C15_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C16_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C16_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C16_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C16_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C16_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C16_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C17_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C17_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C17_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C17_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C17_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C17_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_C18_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_C18_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_C18_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_C18_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_C18_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_C18_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P01_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P01_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P01_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P01_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P01_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P01_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P02_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P02_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P02_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P02_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P02_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P02_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P03_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P03_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P03_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P03_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P03_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P03_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P04_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P04_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P04_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P04_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P04_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P04_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P05_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P05_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P05_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P05_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P05_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P05_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P06_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P06_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P06_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P06_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P06_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P06_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P07_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P07_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P07_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P07_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P07_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P07_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P08_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P08_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P08_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P08_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P08_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P08_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P10_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P10_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P10_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P10_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P10_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P10_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P11_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P11_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P11_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P11_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P11_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P11_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P12_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P12_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P12_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P12_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P12_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P12_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P13_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P13_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P13_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P13_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P13_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P13_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P14_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P14_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P14_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P14_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P14_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P14_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P15_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P15_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P15_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P15_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P15_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P15_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> dti_FA_P16_FAi
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >>> 'dti_FA_P16_FAi_to_target_nonlinear'
> >>> ** ERROR: nifti_image_open(dti_FA_P16_FAi_to_target_nonlinear):
> >> bad
> >>> header info
> >>> Error: failed to open file dti_FA_P16_FAi_to_target_nonlinear
> >>> ERROR: Could not open image dti_FA_P16_FAi_to_target_nonlinear
> >>> Image Exception : #22 :: Failed to read volume
> >>> dti_FA_P16_FAi_to_target_nonlinear
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> merging all upsampled FA images into single 4D image
> >>>
> >>> Usage: fslmerge <-x/y/z/t/a> <output> <file1 file2 .......>
> >>> -t : concatenate images in time
> >>> -x : concatenate images in the x direction
> >>> -y : concatenate images in the y direction
> >>> -z : concatenate images in the z direction
> >>> -a : auto-choose: single slices -> volume, volumes -> 4D
> >> (time
> >>> series)
> >>> ** ERROR (nifti_image_read): failed to find header file for
> 'all_FA'>>> ** ERROR: nifti_image_open(all_FA): bad header info
> >>> Error: failed to open file all_FA
> >>> Error:: FslCloneHeader: Null pointer passed for FSLIO
> >>> creating valid mask and mean FA
> >>> ** ERROR (nifti_image_read): failed to find header file for
> 'all_FA'>>> ** ERROR: nifti_image_open(all_FA): bad header info
> >>> Error: failed to open file all_FA
> >>> Cannot open volume all_FA for reading!
> >>> ** ERROR (nifti_image_read): failed to find header file for
> 'all_FA'>>> ** ERROR: nifti_image_open(all_FA): bad header info
> >>> Error: failed to open file all_FA
> >>> Cannot open volume all_FA for reading!
> >>> ** ERROR (nifti_image_read): failed to find header file for
> 'all_FA'>>> ** ERROR: nifti_image_open(all_FA): bad header info
> >>> Error: failed to open file all_FA
> >>> Cannot open volume all_FA for reading!
> >>> skeletonising mean FA
> >>> ** ERROR (nifti_image_read): failed to find header file for
> >> 'mean_FA'> ** ERROR: nifti_image_open(mean_FA): bad header info
> >>> Error: failed to open file mean_FA
> >>> ERROR: Could not open image mean_FA
> >>> Image Exception : #22 :: Failed to read volume mean_FA
> >>> terminate called after throwing an instance of
> >>> 'RBD_COMMON::BaseException'
> >>> Aborted
> >>> now view mean_FA_skeleton to check whether the default threshold
> >> of
> >>> 2000
> >>> needs changing, when running:
> >>> tbss_4_prestats [threshold]
> >>> hanne@gyrus:~/DTI_Irina/TBBS$
> >>>
> >>
> >>
> >> -----------------------------------------------------------------
> ---
> >> -------
> >> Stephen M. Smith, Professor of Biomedical Engineering
> >> Associate Director, Oxford University FMRIB Centre
> >>
> >> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> >> +44 (0) 1865 222726 (fax 222717)
> >> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> >> -----------------------------------------------------------------
> ---
> >> -------
> >>
> >
>
>
> --------------------------------------------------------------------
> -------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> --------------------------------------------------------------------
> -------
>
|