Urgh - 32-bit! That probably explains the problem, but we can still
have a quick look at your data.
Cheers, Steve.
On 5 Feb 2009, at 09:50, Mareike Menz wrote:
> Dear Matthew,
>
> thanks again for your time.
> I uploaded the directory and got the number 251845.
> I also included the raw data in the directory.
> By the way - we are still working on 32-bit architecture (and no
> chance to change that soon),
> nevertheless it worked before ;).
>
> Many regards,
> Mareike
>
>
>
> Matthew Webster wrote:
>> Hi,
>> FSL4.1.2 does make additional fslstats calls, but I'm surprised
>> it still crashes on the 4GB machine. Can you tar up the feat
>> directory and upload it to:
>> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>> and let us know the 6-digit reference number?
>> Many Regards
>> Matthew
>>> Dear FSL Team,
>>>
>>> We recently updated FSL from 4.0 to 4.12.
>>> Ever since feat crashes during preprocessing with
>>> Image Exception : #99 :: Out of memory
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> after /common/apps/fsl-412/bin/fslstats prefiltered_func_data_st -
>>> k mask -p 50.
>>>
>>> This happens with exactly the same data I evaluated before, with
>>> the same parameters - I only reopened the *fsf - files and resaved
>>> them under Feat from FSL 4.12 (and changed location of MNI_152
>>> etc.). I also use identical hardware (identical machine, maybe a
>>> few updates) which worked well before (in December). The memory
>>> load sums up to about 90% (1GB RAW) and then the process crashes.
>>> Interestingly, this happened also with 4GB RAM, when I testes
>>> different hardware.
>>>
>>> To us this looks like a strange memory conflict (maybe connected
>>> to our configurations) and now we wonder if you changed anything
>>> in memory handling between version 4.0 and version 4.1?
>>>
>>> Thanks for your help and greetings from Hamburg,
>>> Mareike
>>>
>>>
>>>
>>>
>>> --
>>> Mareike Menz
>>> NeuroImage Nord Lübeck
>>> University Medical Center Hamburg-Eppendorf, Bldg. S10
>>> Martinistr. 52
>>> 20246 Hamburg
>>> Germany
>>> +49 40 7410 53683
>>> [log in to unmask]
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>>>
>>> --
>>> Pflichtangaben gemäß Gesetz über elektronische Handelsregister und
>>> Genossenschaftsregister sowie das Unternehmensregister (EHUG):
>>>
>>> Universitätsklinikum Hamburg-Eppendorf
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>>> Gerichtsstand: Hamburg
>>>
>>> Vorstandsmitglieder:
>>> Prof. Dr. Jörg F. Debatin (Vorsitzender)
>>> Dr. Alexander Kirstein
>>> Ricarda Klein
>>> Prof. Dr. Dr. Uwe Koch-Gromus
>
> --
> Mareike Menz
> NeuroImage Nord Lübeck
> University Medical Center Hamburg-Eppendorf, Bldg. S10
> Martinistr. 52
> 20246 Hamburg
> Germany
> +49 40 7410 53683
> [log in to unmask]
> -------------------------
> () ascii ribbon campaign
> /\ - against html mail
>
>
> --
> Pflichtangaben gemäß Gesetz über elektronische Handelsregister und
> Genossenschaftsregister sowie das Unternehmensregister (EHUG):
>
> Universitätsklinikum Hamburg-Eppendorf
> Körperschaft des öffentlichen Rechts
> Gerichtsstand: Hamburg
>
> Vorstandsmitglieder:
> Prof. Dr. Jörg F. Debatin (Vorsitzender)
> Dr. Alexander Kirstein
> Ricarda Klein
> Prof. Dr. Dr. Uwe Koch-Gromus
---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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