Yes Matt
There is a carriage return at the last line for both files.
Cheers
Cibu
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Matt Glasser
Sent: Tuesday, February 03, 2009 11:51 AM
To: [log in to unmask]
Subject: Re: [FSL] Incompatible Dimensions Exception
Is there a carriage return after the last line of both the bvecs and the
bvals?
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Cibu Thomas
Sent: Tuesday, February 03, 2009 9:55 AM
To: [log in to unmask]
Subject: Re: [FSL] Incompatible Dimensions Exception
Hello there
Here's the output from the data integrity check. Looks fine to me. But
DTIfit continues to produce the same error message
/autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/data
data_type INT16
dim1 128
dim2 128
dim3 60
dim4 70
datatype 4
pixdim1 2.0000000000
pixdim2 2.0000000000
pixdim3 2.0000002384
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
/autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/nodif_brain_mas
k
data_type INT16
dim1 128
dim2 128
dim3 60
dim4 1
datatype 4
pixdim1 2.0000000000
pixdim2 2.0000000000
pixdim3 2.0000002384
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
num lines
in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvals
1
num words
in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvals
70
num lines
in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvecs
3
num words
in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvecs
210
On Mon, 2009-02-02 at 23:05 +0100, Markus Gschwind wrote:
> Hi!
>
> What does it say if you type:
> bedpostx_datacheck <your_dtifit_directory>
>
> Can you post the answere here, please?
>
> All the best,
> Markus
>
>
>
> 2009/2/2 Cibu <[log in to unmask]>
>
> Hello
>
> I am having some trouble running the DTIFIT
> reconstruction tool box.
>
> The error message says:
>
> Terminate called after throwing an instance of
> 'NEWMAT::IncompatibleDimensionsException'
>
> I made sure the bval and bvec values are horizontally
> ordered. Please see attachment for the files.
>
> Many thanks in advance for your suggestions
>
>
>
> - cibu
>
>
>
>
>
>
>
> --
> Dr. med. Markus Gschwind, M.D.
> Laboratory for Neurology and Imaging of Cognition
> Dept of Neurosciences
> University Medical Center (CMU)
> 1 Michel-Servet - 1211 GENEVA - CH
>
> Tel 0041 (0) 22 379 5324
> Fax 0041 (0) 22 379 5402
> email: [log in to unmask]
> http://labnic.unige.ch
>
>
>
> --
> Dr. med. Markus Gschwind, M.D.
> Laboratory for Neurology and Imaging of Cognition
> Dept of Neurosciences
> University Medical Center (CMU)
> 1 Michel-Servet - 1211 GENEVA - CH
>
> Tel 0041 (0) 22 379 5324
> Fax 0041 (0) 22 379 5402
> email: [log in to unmask]
> http://labnic.unige.ch
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