Hi Gwenaëlle,
Thanks for your feedback.
Actually when I looked the FA maps in the "slicedir", they all look fine.
So, how can I identify the one which is causing the trouble?
Thanks again. I appreciate your help.
Regards,
Dinesh
> Hi Dinesh,
>
> presumably nothing went wrong...
> In the new version of TBSS, FA and skeletonised images are masked by the
> *intersection* of all your FA images. In other words, this new
> pre-processing prevents you from doing statistical analysis with some data
> missing. If some parts of the brain are missing in your study, it means
> that at least one of your images does not contain these parts of the
> brain.
> If this is only one suject that reduces considerably the spatial extent of
> your analysis, then you should probably remove it from your study.
>
> Hope this helps,
> Gwenaëlle
>
>
> --- En date de : Dim 22.2.09, Dinesh K. Shukla <[log in to unmask]>
> a écrit :
>
>> De: Dinesh K. Shukla <[log in to unmask]>
>> Objet: [FSL] tbss_2_reg problem
>> À: [log in to unmask]
>> Date: Dimanche 22 Février 2009, 7h07
>> Dear FSL users,
>>
>> The "all_FA" and other images in the
>> "stats" directory after "tbss_2_reg"
>> (with option -T) contain only part of the brain. Can
>> somebody please help
>> me figuring out what went wrong!
>>
>> Thank you so much.
>>
>> Regards,
>> Dinesh
>
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>
>
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