Francis E Reyes wrote:
> I think this was posted earlier, but the geometry constraints for the
> cartoon mode is a little tight for a residue of my protein. What's the
> setting to relax them so it'll draw a continuous tube instead of
> leaving it blank?
>
> Thanks
>
> FR
>
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
>
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>
> 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D
>
Do you mean that you want to change the secondary structure assignment?
Then the source below could help you.
http://pymol.sourceforge.net/newman/user/S0260cartoons.html
show cartoon
alter 11-40/, ss='H' # assign residues 11-40 as helix
alter 40-52/, ss='L' # assign residues 40-52 as loop
alter 52-65/, ss='S' # assign residues 52-65 as sheet
alter 65-72/, ss='H' # assign residues 65-72 as helix
rebuild # regenerate the cartoon
Tim
--
Tim Schulte
Ruhr-Universität Bochum
LS Biophysik
AG Proteinkristallographie
Universitätsstr. 150
44780 Bochum
Germany
Tel. +49-234-32-25754
|