Good information to consider.
Any suggestions about probability theory would be appreciated.
What about these ones (Will Penny - web site):
K Friston, C Chu, J Mourao-Miranda, O Hulme, G Rees, W Penny, and J Ashburner. Bayesian decoding of brain images. Neuroimage, 39(1):181-205, 2008.
W. D. Penny, G. Flandin, and N. Trujillo-Barreto. Bayesian comparison of spatially regularised general linear models. Human Brain Mapping, 28(4):275-293, 2007.
All the best,
Gemma
-----Original Message-----
From: SPM (Statistical Parametric Mapping) on behalf of John Ashburner
Sent: Thu 2/26/2009 4:32 PM
To: [log in to unmask]
Cc:
Subject: Fwd: Re: Appropriate references for SPM8 standard fMRI analysis
> When I click on "spatial normalization" in SPM 8 , on which papers am
> I "clicking"?
Normalize probably won't do the best job. The Segment button has really been
recommended for spatially normalising via anatomical MR scans since SPM5 (see
Crinion et al, NeuroImage 37(3) for reasons). Quite soon (after a bit more
coding), DARTEL may become the suggested way (see Klein et al, NeuroImage in
press). Anyway, here are some of the key references....
** Realign **
Friston KJ, Ashburner J, Frith CD, Poline J-B, Heather JD & Frackowiak RSJ
(1995). "Spatial registration and normalization of images". Human Brain
Mapping. 3(3):165--189
** Realign & Unwarp **
Andersson JLR, Hutton C, Ashburner J, Turner R & Friston KJ (2001). "Modeling
geometric deformations in EPI time series". Neuroimage 13(5):903--919
** Coreg **
A. Collignon, F. Maes, D. Delaere, D. Vandermeulen, P. Suetens & G. Marchal
(1995). "Automated Multi-Modality Image Registration Based on Information
Theory". In Proc. Information Processing in Medical Imaging (IPMI), pp
263--274.. Y. Bizais, C. Barillot & R. Di Paola (eds). Kluwer Academic
Publishers, Dordrecht, The Netherlands.
** Normalize **
Ashburner J & Friston KJ (1999). "Nonlinear spatial normalization using basis
functions". Human Brain Mapping. 7(4):254--266
** Normalize - but with lesion masking **
Brett M, Leff AP, Rorden C & Ashburner J (2001). "Spatial normalization of
brain images with focal lesions using cost function masking". NeuroImage
14(2):486--500
** Segment **
Ashburner J & Friston KJ (2005). "Unified segmentation". NeuroImage
26(3):839--851.
** DARTEL **
Ashburner J. (2007). "A Fast Diffeomorphic Image Registration Algorithm".
NeuroImage 38:95--113
Ashburner J & Friston KJ (In Press). "Computing Average Shaped Tissue
Probability Templates". NeuroImage, In Press.
All the best,
-John
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