Hi Cibu
Would you like to upload your (tarred-zipped) data directory onto our
server, and we could have a look.
It's in www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
(also send the 6-digit ref number!)
Cheers,
Saad.
On 3 Feb 2009, at 19:13, Cibu wrote:
> Yes Matt
> There is a carriage return at the last line for both files.
>
> Cheers
> Cibu
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
> Behalf
> Of Matt Glasser
> Sent: Tuesday, February 03, 2009 11:51 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Incompatible Dimensions Exception
>
> Is there a carriage return after the last line of both the bvecs and
> the
> bvals?
>
> Peace,
>
> Matt.
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
> Behalf
> Of Cibu Thomas
> Sent: Tuesday, February 03, 2009 9:55 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Incompatible Dimensions Exception
>
> Hello there
> Here's the output from the data integrity check. Looks fine to me. But
> DTIfit continues to produce the same error message
>
> /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/data
> data_type INT16
> dim1 128
> dim2 128
> dim3 60
> dim4 70
> datatype 4
> pixdim1 2.0000000000
> pixdim2 2.0000000000
> pixdim3 2.0000002384
> pixdim4 1.0000000000
> cal_max 0.0000
> cal_min 0.0000
> file_type NIFTI-1+
>
> /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/
> nodif_brain_mas
> k
> data_type INT16
> dim1 128
> dim2 128
> dim3 60
> dim4 1
> datatype 4
> pixdim1 2.0000000000
> pixdim2 2.0000000000
> pixdim3 2.0000002384
> pixdim4 1.0000000000
> cal_max 0.0000
> cal_min 0.0000
> file_type NIFTI-1+
>
> num lines
> in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvals
> 1
> num words
> in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvals
> 70
> num lines
> in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvecs
> 3
> num words
> in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvecs
> 210
>
>
>
> On Mon, 2009-02-02 at 23:05 +0100, Markus Gschwind wrote:
>> Hi!
>>
>> What does it say if you type:
>> bedpostx_datacheck <your_dtifit_directory>
>>
>> Can you post the answere here, please?
>>
>> All the best,
>> Markus
>>
>>
>>
>> 2009/2/2 Cibu <[log in to unmask]>
>>
>> Hello
>>
>> I am having some trouble running the DTIFIT
>> reconstruction tool box.
>>
>> The error message says:
>>
>> Terminate called after throwing an instance of
>> 'NEWMAT::IncompatibleDimensionsException'
>>
>> I made sure the bval and bvec values are horizontally
>> ordered. Please see attachment for the files.
>>
>> Many thanks in advance for your suggestions
>>
>>
>>
>> - cibu
>>
>>
>>
>>
>>
>>
>>
>> --
>> Dr. med. Markus Gschwind, M.D.
>> Laboratory for Neurology and Imaging of Cognition
>> Dept of Neurosciences
>> University Medical Center (CMU)
>> 1 Michel-Servet - 1211 GENEVA - CH
>>
>> Tel 0041 (0) 22 379 5324
>> Fax 0041 (0) 22 379 5402
>> email: [log in to unmask]
>> http://labnic.unige.ch
>>
>>
>>
>> --
>> Dr. med. Markus Gschwind, M.D.
>> Laboratory for Neurology and Imaging of Cognition
>> Dept of Neurosciences
>> University Medical Center (CMU)
>> 1 Michel-Servet - 1211 GENEVA - CH
>>
>> Tel 0041 (0) 22 379 5324
>> Fax 0041 (0) 22 379 5402
>> email: [log in to unmask]
>> http://labnic.unige.ch
>
Saad Jbabdi
Oxford University FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
+44 (0) 1865 222545 (fax 717)
www.fmrib.ox.ac.uk/~saad
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