yes that's right.
Saad.
On 25 Feb 2009, at 10:09, Catherine Traynor wrote:
> Hi Saad
>
> So I should use the termination mask in combination with my
> classification
> targets?
>
> Thanks, Catherine
>
> On 25/2/09 09:42, "Saad Jbabdi" <[log in to unmask]> wrote:
>
>> Hi Catherine,
>>
>> You can use the --stop option (or termination masks in the GUI). If
>> you merge both targets into a single mask (e.g. with fslmaths) that
>> you use as a termination mask, then sample tracts that get to any of
>> these targets will terminate there.
>>
>> Cheers,
>> Saad.
>>
>>
>> On 24 Feb 2009, at 12:26, Catherine Traynor wrote:
>>
>>> I am carrying out the connectivity-based seed classification using
>>> two
>>> adjacent cortical target masks. I am concerned about paths that
>>> appear to
>>> travel through one of the target regions and on to the other. The
>>> seed voxel
>>> is then classified as connecting to both target regions for a single
>>> path.
>>>
>>> What is the best way to deal with this situation? Is there any way
>>> to
>>> terminate the path after it encounters the first target region,
>>> without
>>> having to run probtrack separately for each region?
>>>
>>> Many thanks
>>>
>>> Catherine Traynor
>>>
>>
>> Saad Jbabdi
>> Oxford University FMRIB Centre
>>
>> JR Hospital, Headington, OX3 9DU, UK
>> +44 (0) 1865 222545 (fax 717)
>> www.fmrib.ox.ac.uk/~saad
>
Saad Jbabdi
Oxford University FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
+44 (0) 1865 222545 (fax 717)
www.fmrib.ox.ac.uk/~saad
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