JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for CCP4BB Archives


CCP4BB Archives

CCP4BB Archives


CCP4BB@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

CCP4BB Home

CCP4BB Home

CCP4BB  February 2009

CCP4BB February 2009

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: PEG3350-based cryoprotectant

From:

Anthony Addlagatta <[log in to unmask]>

Reply-To:

[log in to unmask]

Date:

Sun, 15 Feb 2009 07:17:04 +0530

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (79 lines)

Keith,

There could be as many number of stories of cryoprotection to as many number of
structures deposited in the pdb.

PEG3350 seems to be little too large for freezing, particularly in presence of so much
of salt. I have collected data up to 1.0 Ang with PEG2000 freezing.

If you have not tried:
-try oils

-try from low concentrations of cryoprotectants to the required concentration in steps
I have seen people do this process over several hours to several days. 

-Since your crystals seems to already have some glycerol, it may be worth to try that in
steps of 2-5% up to 20-25%. Larger the crystal longer should be the incubation in each step.

-From my experience, on freezing, small crystals do better in terms of mosaicity. If you
plan to collect data on a synchrotron, choose small crystals.

Good luck

Anthony


On Sat, 14 Feb 2009 21:15:11 -0500, Keith Romano wrote
> Hi all,
> 
> I have protein crystals in complex with substrate grown in 20-30% (w/ 
> v) PEG 3350, 4% (w/v) ammonium sulfate, and 0.1M sodium MES buffer at  
> pH 6.5.  I purify and concentrate my protein in a high salt buffer  
> (0.5M NaCl, 0.1M sodium MES at pH 6.5, 10% glycerol, 2mM DTT).
> 
> I grow my crystals with vapor diffusion in 24-well format by hanging  
> a drop of equal volume protein and precipitant solution over the  
> reservoir of precipitant solution.  Interestingly, when I do the  
> math, the initial osmolarity of my drop is greater than that of the  
> reservoir (due to the high NaCl in the protein solution).  As far as  
> I know, this runs against the principles of the vapor diffusion  
> method, as vapor will leave the reservoir and enter the drop...
> 
> Nevertheless, these conditions yield giant, rod-like crystals over  
> 1mm long.  However, they don't react well to direct flash freezing-  
> the spots tend to smear and indexed refinement leads to high  
> mosaicity.  I have tried many cryoprotectant solutions by making up  
> the given precipitant solution with 15-25% glycerol or ethylene  
> glycol, including a range from 0mM to 350mM NaCl.  In general,  
> dipping the crystals in cryoprotectant improves the diffraction and  
> lessens the "spot smearing".  However, the diffraction usually  
> becomes highly twinned and hard to index.  After transfer into the  
> cryoprotectant, the crysatls appear to crack and often break apart,  
> as observed under the microscope.
> 
> It seems like my crystals are very sensitive to the osmotic/ionic  
> change when transferred to the cryoprotectant.  I have been unable to  
> find a "stable" cryoprotectant, and I am wondering if anyone has had  
> similar experience with high-weight PEGs and could suggest some  
> cryoprotectants to try out.
> 
> Any input would be greatly appreciated!
> 
> Keith
> 
> Department of Biochemistry & Molecular Pharmacology
> 970L Lazare Research Building
> University of Massachusetts Medical School
> 364 Plantation Street
> Worcester, MA 01605


-------------------------------------------------
Anthony Addlagatta, Ph.D.
Ramanujan Fellow and Senior Scientist
Center for Chemical Biology
Indian Institute of Chemical Technology [IICT]
Tarnaka, Hyderabad- 500007, INDIA
Tel:+91-40-27191583
Url: http://www.iictindia.org/zacb/Dr.%20Anthony.aspx

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

May 2024
April 2024
March 2024
February 2024
January 2024
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager