Hi,
I'm trying to automate getting the mean FA from each subject for each output
contrast of TBSS, within each cluster.
If I binarise my contrast (at a certain threshold) and then apply it as a
mask to all_FA_skeletonised with fslmeants, I get the mean FA for all sig.
clusters together, but I'd like to break it down to a per-cluster output.
Using the cluster command finds the clusters, but does not output individual
images for each.
Ideally I'd like a way to use the clusters from "cluster" as masks in
fslmeants, so that I'd get one big table for each contrast... any thoughts?
(or I should say any thoughts that would not involve drawing individual ROIs
by hand :) )
Thanks,
Cherif
|